{ "_id": "6ab0e5553d719c1f8408450d", "Package": "InformativeCensoring", "Type": "Package", "Title": "Multiple Imputation for Informative Censoring", "Version": "0.3.6", "Authors@R": "c(\nperson(\"David\", \"Ruau\",\nemail='davidruau@gmail.com',\nrole=c(\"aut\")),\nperson(\"Nikolas\", \"Burkoff\",\nrole=c(\"aut\")),\nperson(\"Jonathan\", \"Bartlett\",\nemail='jonathan.bartlett1@lshtm.ac.uk',\nrole=c(\"aut\",\"cre\")),\nperson(\"Dan\", \"Jackson\",\nemail='daniel.jackson1@astrazeneca.com',\nrole=c(\"aut\")),\nperson(\"Edmund\", \"Jones\",\nemail='epaj2@medschl.cam.ac.uk',\nrole=c(\"aut\")),\nperson(\"Martin\", \"Law\",\nemail='martin.law@mrc-bsu.cam.ac.uk',\nrole=c(\"aut\")),\nperson(\"Paul\", \"Metcalfe\",\nemail='paul.metcalfe@astrazeneca.com',\nrole=c(\"aut\"))\n)", "Maintainer": "Jonathan Bartlett ", "Author": "David Ruau [aut], Nikolas Burkoff [aut], Jonathan Bartlett\n[aut, cre], Dan Jackson [aut], Edmund Jones [aut], Martin Law\n[aut], Paul Metcalfe [aut]", "Description": "Multiple Imputation for Informative Censoring. This\npackage implements two methods. Gamma Imputation described in\n and Risk Score Imputation described in\n.", "License": "GPL (>= 2) | file LICENSE", "LazyLoad": "yes", "VignetteBuilder": "knitr", "URL": "https://github.com/jwb133/InformativeCensoring", "RoxygenNote": "7.2.3", "Repository": "https://jwb133.r-universe.dev", "Date/Publication": "2023-06-05 14:10:03 UTC", "RemoteUrl": "https://github.com/jwb133/informativecensoring", "RemoteRef": "HEAD", "RemoteSha": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-21 08:00:29 UTC", "User": "root" }, "_user": "jwb133", "_type": "src", "_file": "InformativeCensoring_0.3.6.tar.gz", "_fileid": "https://r2.ropensci.org/a6a5ad5b36682bd7f611f6b2d5a42026179b3a72a9411947ee2900d6905006f6", "_filesize": 967590, "_sha256": "a6a5ad5b36682bd7f611f6b2d5a42026179b3a72a9411947ee2900d6905006f6", "_expires": "2026-12-30T08:05:40.000Z", "_created": "2026-09-21T08:00:29.000Z", "_published": "2026-09-21T08:05:41.835Z", "_jobs": [ { "job": 106256982322, "time": 227, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10627886436" }, { "job": 106256982174, "time": 263, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10628695941" }, { "job": 106256982222, "time": 141, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10627691593" }, { "job": 106256982170, "time": 151, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10628291489" }, { "job": 106255481092, "time": 345, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10627706229" }, { "job": 106256982199, "time": 112, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10627594655" }, { "job": 106256982242, "time": 142, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10628276497" }, { "job": 106256982277, "time": 167, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10628191729" }, { "job": 106256982339, "time": 169, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10628370743" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466", "_status": "success", "_upstream": "https://github.com/jwb133/informativecensoring", "_commit": { "id": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "author": "Jonathan Bartlett ", "committer": "Jonathan Bartlett ", "message": "Updating maintainer email address. Changing a class check to use inherit(s). Adding news.md file.\n", "time": 1685974203 }, "_maintainer": { "name": "Jonathan Bartlett", "email": "jonathan.bartlett1@lshtm.ac.uk", "login": "jwb133", "twitter": "@TheStatsGeek", "description": "Professor in Medical Statistics at the Department of Medical Statistics, London School of Hygiene & Tropical Medicine, UK.", "uuid": 10440582 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.2", "role": "Depends" }, { "package": "survival", "version": ">= 2.36-1", "role": "Depends" }, { "package": "boot", "role": "Imports" }, { "package": "dplyr", "version": ">= 0.4.3", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "jwb133", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "bobthecat", "count": 43, "uuid": 687067 }, { "user": "pdmetcalfe", "count": 6, "uuid": 1857420 }, { "user": "jwb133", "count": 1, "uuid": 10440582 } ], "_userbio": { "uuid": 10440582, "type": "user", "name": "Jonathan Bartlett", "followers": 79, "description": "Professor in Medical Statistics at the Department of Medical Statistics, London School of Hygiene & Tropical Medicine, UK." }, "_downloads": { "count": 367, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/InformativeCensoring" }, "_devurl": "https://github.com/jwb133/informativecensoring", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/InformativeCensoring.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/jwb133/informativecensoring", "_realowner": "jwb133", "_cranurl": true, "_releases": [ { "version": "0.3.4", "date": "2016-08-11" }, { "version": "0.3.5", "date": "2020-07-24" }, { "version": "0.3.6", "date": "2023-06-05" } ], "_exports": [ "col.headings", "cox.zph", "ExtractSingle", "gammaImpute", "ImputeStat", "MakeTimeDepScore", "NN.options", "ScoreImpute", "ScoreStatSet" ], "_datasets": [ { "name": "ScoreInd", "title": "Simulated time to event data with 5 time independent covariates", "object": "ScoreInd", "file": "ScoreInd.rda", "class": [ "data.frame" ], "fields": [ "Id", "arm", "Z1", "Z2", "Z3", "Z4", "Z5", "event", "time", "to.impute", "DCO.time" ], "rows": 400, "table": true, "tojson": true }, { "name": "ScoreTimeDep", "title": "Simulated time dependent variables for time to event data", "object": "ScoreTimeDep", "file": "ScoreTimeDep.rda", "class": [ "data.frame" ], "fields": [ "Id", "start", "end", "W1", "W2" ], "rows": 2191, "table": true, "tojson": true } ], "_help": [ { "page": "InformativeCensoring-package", "title": "Perform methods of multiple imputation for time to event data", "topics": [ "InformativeCensoring-package", "InformativeCensoring" ] }, { "page": "col.headings", "title": "Specify the columns of the data frame required by score imputation method", "topics": [ "col.headings" ] }, { "page": "cox.zph", "title": "Test Cox proportional hazards assumption", "topics": [ "cox.zph" ] }, { "page": "ExtractSingle", "title": "Extract a single risk score/gamma imputed data set/model fit", "topics": [ "ExtractSingle", "ExtractSingle.GammaImputedSet", "ExtractSingle.GammaStatList", "ExtractSingle.ScoreImputedSet", "ExtractSingle.ScoreStatList" ] }, { "page": "gammaImpute", "title": "Perform gamma-Imputation for a given data set", "topics": [ "gammaImpute" ] }, { "page": "GammaImputedData.object", "title": "'GammaImputedData' object", "topics": [ "GammaImputedData.object" ] }, { "page": "GammaImputedSet.object", "title": "'GammaImputedSet' object", "topics": [ "GammaImputedSet.object" ] }, { "page": "GammaStat.object", "title": "'GammaStat' object", "topics": [ "GammaStat.object" ] }, { "page": "GammaStatList.object", "title": "'GammaStatList' object", "topics": [ "GammaStatList.object" ] }, { "page": "ImputeStat", "title": "S3 generic to fit model(s) to risk score/gamma Imputed objects", "topics": [ "ImputeStat", "ImputeStat.GammaImputedData", "ImputeStat.GammaImputedSet", "ImputeStat.ScoreImputedSet" ] }, { "page": "MakeTimeDepScore", "title": "Create a valid 'ScoreTD' object", "topics": [ "MakeTimeDepScore" ] }, { "page": "NN.options", "title": "Create a list of options which control the nearest neighbour algorithm for risk score imputation", "topics": [ "NN.options" ] }, { "page": "ScoreImpute", "title": "Perform risk score multiple imputation method", "topics": [ "ScoreImpute" ] }, { "page": "ScoreImputedData.object", "title": "'ScoreImputedData' object", "topics": [ "ScoreImputedData.object" ] }, { "page": "ScoreImputedSet.object", "title": "'ScoreImputedSet' object", "topics": [ "ScoreImputedSet.object" ] }, { "page": "ScoreInd", "title": "Simulated time to event data with 5 time independent covariates", "topics": [ "ScoreInd" ] }, { "page": "ScoreStat.object", "title": "ScoreStat object", "topics": [ "ScoreStat.object" ] }, { "page": "ScoreStatList.object", "title": "ScoreStatList", "topics": [ "ScoreStatList.object" ] }, { "page": "ScoreStatSet", "title": "S3 generic to create a 'ScoreStatSet' object", "topics": [ "ScoreStatSet" ] }, { "page": "ScoreStatSet.object", "title": "An object which contains the test statistic and estimators for a set of model fits to imputed data using risk score imputation", "topics": [ "ScoreStatSet.object" ] }, { "page": "ScoreTD.object", "title": "A 'ScoreTD' object", "topics": [ "ScoreTD.object" ] }, { "page": "ScoreTimeDep", "title": "Simulated time dependent variables for time to event data", "topics": [ "ScoreTimeDep" ] }, { "page": "summary.ScoreStatSet", "title": "Summary object of 'ScoreStatSet' object", "topics": [ "summary.ScoreStatSet", "summary.ScoreStatSet.object" ] } ], "_readme": "https://github.com/jwb133/informativecensoring/raw/HEAD/README.md", "_rundeps": [ "boot", "cli", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "pillar", "pkgconfig", "R6", "rlang", "survival", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "gamma_imputation_Jackson_2014.Rnw", "filename": "gamma_imputation_Jackson_2014.pdf", "title": "Multiple imputation when relaxing independent censoring assumption tutorial (Jackson 2014)", "engine": "knitr::knitr", "headings": [], "created": "2016-07-26 07:27:54", "modified": "2016-07-28 12:51:28", "commits": 2 }, { "source": "risk_score_imputation_Hsu_2009.Rnw", "filename": "risk_score_imputation_Hsu_2009.pdf", "title": "Risk Score Imputation tutorial (Hsu 2009)", "engine": "knitr::knitr", "headings": [], "created": "2016-07-26 07:27:54", "modified": "2016-07-28 12:51:28", "commits": 2 } ], "_score": 4.819543935541869, "_indexed": true, "_nocasepkg": "informativecensoring", "_universes": [ "jwb133" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.6", "date": "2026-09-21T08:02:39.000Z", "distro": "resolute", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/a295d9b183801dde9a91db439906498faa5c257568b3fd7b5788498dd3eacc92", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.6.1", "os": "linux", "version": "0.3.6", "date": "2026-09-21T08:03:22.000Z", "distro": "resolute", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/74dbb0c6972e324d159884183371001017c1320570388ac493240f7bbcf2ce44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.5.3", "os": "mac", "version": "0.3.6", "date": "2026-09-21T08:02:07.000Z", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/ac72377387a9ee431393b22e2a2ed2b0b8482a1d912b02610cbc11502c6ded0a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.6.1", "os": "mac", "version": "0.3.6", "date": "2026-09-21T08:02:07.000Z", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/4cf8a0bd02e3373dcccfd1b2f95b397542938294d557506b97b27f38ae86062e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.6", "date": "2026-09-21T08:02:42.000Z", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/5b270929dc723cead66b116e50e25e09aec1955b7b4241588ebfc23d22aeafee", "status": "success", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.7.0", "os": "win", "version": "0.3.6", "date": "2026-09-21T08:01:38.000Z", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/6e4167b5e58545dba22c5847700a9ee147e9f0f0d8bae711763a76d709b3ada4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.5.3", "os": "win", "version": "0.3.6", "date": "2026-09-21T08:01:46.000Z", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/95c44194efe07075e00fb70caa66e0238bc73ef00f542ba308905192216c88aa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" }, { "r": "4.6.1", "os": "win", "version": "0.3.6", "date": "2026-09-21T08:01:31.000Z", "commit": "f2e4dfa29555f6a947ba6c5a4cd5555c636452c9", "fileid": "https://r2.ropensci.org/c5740d0f8772c190ad3bf961685b203ee81cfacbac21d290eb476b8040d2f814", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jwb133/actions/runs/35575208466" } ] }